A survery of topic model in bioinformatics

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    22-Jan-2017

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<p>R</p> <p>A survey of topic model in bioinformaticsWACODE#3</p> <p>Twitter @fukunagatsu</p> <p>DNA(RNARNA)</p> <p>: Bag-of-words{:1, :1, :1, :1, :1}</p> <p>Bag-of-words</p> <p>1:1: {:2, :2, :1}2: {:1, :2, :1, :1}3: {:2, :2, :1}</p> <p>1 {:3/15, :4/15, :1/15}</p> <p>2: 1: {:2, :2, :1}2: {:1, :2, :1, :1}3: {:2, :2, :1}</p> <p>11:2:3:</p> <p>EM</p> <p>3:11+</p> <p>(topic model57P)</p> <p>()</p> <p>BoW</p> <p>()BoW</p> <p>Bioinformatics</p> <p>):::Bag of genes </p> <p>:16S or :16S or :16S or </p> <p>:::</p> <p>Bioinformatics</p> <p>:::</p> <p>()</p> <p>13</p> <p>(Nature Methods 2011)16S</p> <p>:16S:OTU()OTU</p> <p>()</p> <p>(Microbiome 2015)</p> <p>:16Senvironmentmicrobial groupOTU</p> <p>microbial group()</p> <p>13topic modelGO</p> <p>1()</p> <p>apply30</p> <p>topic model()</p> <p>Meta-metagenomics</p> <p>(Iwasaki et al. (2009))</p> <p>::HMM(survey)</p>

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